PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG441300.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 475aa    MW: 53204.6 Da    PI: 6.0083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG441300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11274320354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +a+ + Er RR+++N ++  Lr+l P++     +K++ a+i+  A+eYI++L
  Pavir.1NG441300.2.p 274 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 320
                          68899***********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.35E-12273333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8274320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-8277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-10278333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-7280325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MIAGGGYFNG SHDHILMEGS MIHDPSQSSI YDNTNEEQQN FRLAPFSIED HSNPANLTSE  60
PARVIDHIKN QLGIDMEQDH SGHMIQEVAP VETANLVPSI YGVHNHILRS QIREGPHNIT  120
VEQQILDYDA ASYQSGTYAT AHDLLNSLQT QKCSLNPEFP STEHIFGDPA QNMVNHLNMN  180
NDLPGIAIHE SGMMFSDSTL PLGYQATQSH MLKDLYHSLP QNYGLFTSDD ERDGMIRVPG  240
VSGNIFQEID ERQFDSPILG SRRRKGGFGK GKGKANFATE RERREQLNVK YGALRSLFPN  300
PTKNDRASIV GDAIEYINEL NRTVKELKIL VEKKRNSTDR RKMLKLDDEA ADDGESSSMQ  360
LLSDDQNNQM NGAIRSSWIQ RRSKECDVDV RIVDDEINIK FTQKKRANSL LSAAKVLEEF  420
RLDLIHVVAG IVGDHHIFMF NTKIPKGSSV YACAVAKKLL EAVEMKNQAL NIFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452697.10.0hypothetical protein SORBIDRAFT_04g030850
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLC5Y0E40.0C5Y0E4_SORBI; Putative uncharacterized protein Sb04g030850
STRINGSb04g030850.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-54bHLH family protein